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How do I snapshot freshness for one source only?

Use the --select flag to snapshot freshness for specific sources. Eg:

# Snapshot freshness for all Snowplow tables:$ dbt source freshness --select jaffle_shop
# Snapshot freshness for a particular source table:$ dbt source freshness --select jaffle_shop.orders
# Snapshot freshness for multiple particular source tables:$ dbt source freshness --select jaffle_shop.orders jaffle_shop.customers

See the source freshness command reference for more information.